Package: allofus 1.2.0
Rob Cavanaugh
allofus: Interface for 'All of Us' Researcher Workbench
Streamline use of the 'All of Us' Researcher Workbench (<https://www.researchallofus.org/data-tools/workbench/>)with tools to extract and manipulate data from the 'All of Us' database. Increase interoperability with the Observational Health Data Science and Informatics ('OHDSI') tool stack by decreasing reliance of 'All of Us' tools and allowing for cohort creation via 'Atlas'. Improve reproducible and transparent research using 'All of Us'.
Authors:
allofus_1.2.0.tar.gz
allofus_1.2.0.zip(r-4.5)allofus_1.2.0.zip(r-4.4)allofus_1.2.0.zip(r-4.3)
allofus_1.2.0.tgz(r-4.5-any)allofus_1.2.0.tgz(r-4.4-any)allofus_1.2.0.tgz(r-4.3-any)
allofus_1.2.0.tar.gz(r-4.5-noble)allofus_1.2.0.tar.gz(r-4.4-noble)
allofus_1.2.0.tgz(r-4.4-emscripten)allofus_1.2.0.tgz(r-4.3-emscripten)
allofus.pdf |allofus.html✨
allofus/json (API)
NEWS
| # Install 'allofus' in R: |
| install.packages('allofus', repos = c('https://roux-ohdsi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/roux-ohdsi/allofus/issues
- aou_codebook - All of Us Modified Codebook
- aou_concept_codes - Concept codes and survey answers
- aou_health_history - All of Us Health History Codebook
- aou_table_info - Table of tables, columns, and use for researchers from the CT data dictionary
Last updated 5 months agofrom:8d1a184f85. Checks:9 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 05 2025 |
| R-4.5-win | OK | Mar 05 2025 |
| R-4.5-mac | OK | Mar 05 2025 |
| R-4.5-linux | OK | Mar 05 2025 |
| R-4.4-win | OK | Mar 05 2025 |
| R-4.4-mac | OK | Mar 05 2025 |
| R-4.4-linux | OK | Mar 05 2025 |
| R-4.3-win | OK | Mar 05 2025 |
| R-4.3-mac | OK | Mar 05 2025 |
Exports:%>%aou_atlas_cohortaou_bucket_to_workspaceaou_collectaou_computeaou_concept_setaou_connectaou_create_temp_tableaou_joinaou_ls_bucketaou_ls_workspaceaou_observation_periodaou_session_infoaou_sqlaou_surveyaou_tablesaou_workspace_to_bucketon_workbench
Dependencies:askpassbigrquerybitbit64blobbriocliclockcpp11curlDBIdbplyrdplyrfansifsgarglegenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitspurrrR6rapidjsonrrappdirsrlangsessioninfostringistringrsystibbletidyrtidyselecttzdbutf8vctrswithr
All of Us in R
Rendered fromallofus.Rmdusingknitr::rmarkdownon Mar 05 2025.Last update: 2024-08-22
Started: 2023-12-18
Extracting All of Us survey and EHR data
Rendered fromdata.Rmdusingknitr::rmarkdownon Mar 05 2025.Last update: 2024-08-02
Started: 2023-12-18
Managing files on the workbench
Rendered fromworkspace.Rmdusingknitr::rmarkdownon Mar 05 2025.Last update: 2023-12-19
Started: 2023-12-18
Using ATLAS to create a cohort
Rendered fromatlas.Rmdusingknitr::rmarkdownon Mar 05 2025.Last update: 2024-08-22
Started: 2023-12-18
