Package: allofus 1.2.0

Rob Cavanaugh

allofus: Interface for 'All of Us' Researcher Workbench

Streamline use of the 'All of Us' Researcher Workbench (<https://www.researchallofus.org/data-tools/workbench/>)with tools to extract and manipulate data from the 'All of Us' database. Increase interoperability with the Observational Health Data Science and Informatics ('OHDSI') tool stack by decreasing reliance of 'All of Us' tools and allowing for cohort creation via 'Atlas'. Improve reproducible and transparent research using 'All of Us'.

Authors:Louisa Smith [aut, cph], Rob Cavanaugh [aut, cre, cph]

allofus_1.2.0.tar.gz
allofus_1.2.0.zip(r-4.5)allofus_1.2.0.zip(r-4.4)allofus_1.2.0.zip(r-4.3)
allofus_1.2.0.tgz(r-4.4-any)allofus_1.2.0.tgz(r-4.3-any)
allofus_1.2.0.tar.gz(r-4.5-noble)allofus_1.2.0.tar.gz(r-4.4-noble)
allofus_1.2.0.tgz(r-4.4-emscripten)allofus_1.2.0.tgz(r-4.3-emscripten)
allofus.pdf |allofus.html
allofus/json (API)
NEWS

# Install 'allofus' in R:
install.packages('allofus', repos = c('https://roux-ohdsi.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/roux-ohdsi/allofus/issues

Datasets:

On CRAN:

18 exports 9 stars 2.54 score 43 dependencies 25 scripts 1.2k downloads

Last updated 27 days agofrom:eeb0637dda. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 22 2024
R-4.5-winOKAug 22 2024
R-4.5-linuxOKAug 22 2024
R-4.4-winOKAug 22 2024
R-4.4-macOKAug 22 2024
R-4.3-winOKAug 22 2024
R-4.3-macOKAug 22 2024

Exports:%>%aou_atlas_cohortaou_bucket_to_workspaceaou_collectaou_computeaou_concept_setaou_connectaou_create_temp_tableaou_joinaou_ls_bucketaou_ls_workspaceaou_observation_periodaou_session_infoaou_sqlaou_surveyaou_tablesaou_workspace_to_bucketon_workbench

Dependencies:askpassbigrquerybitbit64blobbriocliclockcpp11curlDBIdbplyrdplyrfansifsgarglegenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitspurrrR6rapidjsonrrappdirsrlangsessioninfostringistringrsystibbletidyrtidyselecttzdbutf8vctrswithr

All of Us in R

Rendered fromallofus.Rmdusingknitr::rmarkdownon Aug 22 2024.

Last update: 2024-08-22
Started: 2023-12-18

Extracting All of Us survey and EHR data

Rendered fromdata.Rmdusingknitr::rmarkdownon Aug 22 2024.

Last update: 2024-08-02
Started: 2023-12-18

Managing files on the workbench

Rendered fromworkspace.Rmdusingknitr::rmarkdownon Aug 22 2024.

Last update: 2023-12-19
Started: 2023-12-18

Using ATLAS to create a cohort

Rendered fromatlas.Rmdusingknitr::rmarkdownon Aug 22 2024.

Last update: 2024-08-22
Started: 2023-12-18